PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G29460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 406aa    MW: 40596.6 Da    PI: 4.784
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G29460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.4e-12218263555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  LPERR02G29460.1 218 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 263
                      99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-17211273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16215272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.06E-13217267No hitNo description
PfamPF000102.6E-9218263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MQPNGREMHD DGSGGGGGGG GGGQIDFFDE MLSTLPPTVW SEHGGSGKII WELLTGGAGA  60
AAGGSDDHSA FDDSALLASR LRQHQIDGGG GGEDKPIMLQ LSDLQLRHGL SDAAGGEDGG  120
FLPLPLFTDR SSRDDIDAAF KSPNAAGADQ ALYNGFAAAM QPPPFGQGGS MPAQSFGGGA  180
AASGGGAAAA AGASSGGGAA APPRQRQRAR RGQATDPHSI AERLRRERIA ERMKALQELV  240
PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGASAV APLVANMSSE SNGNGNATSS  300
SGNGEAANGS SNGENGGDTM RVTEQQVAKL MEEDMGSAMQ YLQGKGLCLM PISLASAISS  360
ATSSSLLPRH GGGAGGTLHE GGNGASPPLV NGASGGGDDV GAGGKQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222227RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039755e-98AP003975.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_E04.
GenBankAP0040945e-98AP004094.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1695_H09.
GenBankAP0149585e-98AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627343.11e-169PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG96e-79BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0D9VM510.0A0A0D9VM51_9ORYZ; Uncharacterized protein
STRINGORGLA02G0311000.11e-167(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-41LJRHL1-like 3